Table 2 Summary of Meta-QTLs and genes identified in this study
Meta-QTL ID | Linkage group | Position | Confidence interval (95%) | Flanking markers | No. of QTL in Meta-QTL | Traits | Number of genes | ||
|---|---|---|---|---|---|---|---|---|---|
Absolute | Start | End | |||||||
Meta-QTL1.1 | PgLG01 | 0.17 | 0 | 0.85 | 0.68 | IPES0017-S1_3590 | 8 | PH, RR, TSW, PL, SYPP, BR, FT | 65 |
Meta-QTL1.2 | PgLG01 | 16.04 | 13.69 | 18.43 | 4.78 | Xipes0017-Xpsms39 | 4 | FT, GS, RR, PL | 11 |
Meta-QTL1.3 | PgLG01 | 22.18 | 20.315 | 24.04 | 3.73 | Xpsms39-IPES0042 | 6 | SYPP, GS, RR, PL, TSW | 4 |
Meta-QTL1.4 | PgLG01 | 26.86 | 24.45 | 29.26 | 4.81 | Xpsms39-IPES0042 | 6 | Fe, RR, GS, SYPP, TSW, PL | 2 |
Meta-QTL1.5 | PgLG01 | 51.4 | 50.81 | 51.98 | 1.17 | Xpsmp2069-PSMP2069 | 2 | Fe, Zn | 47 |
Meta-QTL1.6 | PgLG01 | 61.83 | 60.38 | 63.28 | 2.9 | Xismp3017-IPES0098 | 4 | PH, PL, FT | 35 |
Meta-QTL1.7 | PgLG01 | 86.69 | 85.77 | 87.6 | 1.83 | pgpb9684-IPES0203 | 2 | PL, SYPP | 30 |
Meta-QTL2.1 | PgLG02 | 0.42 | 0 | 1.165 | 1.49 | IPES0123-Xpsmp2201 | 9 | SYPP, CP, TSW, PH | 40 |
Meta-QTL2.2 | PgLG02 | 23.97 | 23.13 | 24.81 | 1.68 | Xibmsp31-Xpsmp2231 | 10 | CP, PH, TSW | 14 |
Meta-QTL2.3 | PgLG02 | 58.42 | 57.595 | 59.245 | 1.65 | Xpsmp2237-S2_7773 | 6 | WU, BM, BR, CS, PL | 23 |
Meta-QTL2.4 | PgLG02 | 86.81 | 85.11 | 88.51 | 3.4 | Xipes027-Xibmcp8 | 5 | BR, WU, CP, PH | 162 |
Meta-QTL2.5 | PgLG02 | 101.86 | 101.34 | 102.38 | 1.04 | Xipes0181-pgpb11717 | 4 | PL, WU, CP, BM | 13 |
Meta-QTL2.6 | PgLG02 | 132 | 130.62 | 133.38 | 2.76 | pgpb11552-pgpb6832 | 2 | TSW, FT | 31 |
Meta-QTL2.7 | PgLG02 | 139 | 138.91 | 139.09 | 0.18 | pgpb6832-IPES0181 | 6 | Fe, Zn | 0 |
Meta-QTL3.1 | PgLG03 | 0.68 | 0 | 1.78 | 2.2 | ICMP4014-IPES0161 | 7 | GS, Zn, TSW, PH, BR, FT | 20 |
Meta-QTL3.2 | PgLG03 | 38 | 36.6 | 39.4 | 2.8 | Xpsmp2267-PSMP2214 | 2 | PH, FT | 104 |
Meta-QTL3.3 | PgLG03 | 47.98 | 46.9 | 49.05 | 2.15 | Xpsmp2227-Xpsmp2214 | 4 | Fe, PH, Zn | 8 |
Meta-QTL3.4 | PgLG03 | 61.91 | 60.37 | 63.44 | 3.07 | IPES0233-pgpb9069 | 2 | Fe, TSW | 37 |
Meta-QTL3.5 | PgLG03 | 104.99 | 103.48 | 106.49 | 3.01 | IPES0180-Xpsm2222 | 3 | Fe, Zn, PL | 108 |
Meta-QTL3.6 | PgLG03 | 120.71 | 119.5 | 121.91 | 2.41 | Xpsms17-IPES0220 | 6 | Fe, Zn, PL, PD | 36 |
Meta-QTL3.7 | PgLG03 | 143.99 | 143.49 | 144.48 | 0.99 | pgpb6901-Xpsms31 | 2 | PH, PL | 0 |
Meta-QTL4.1 | PgLG04 | 2.78 | 1.54 | 4.02 | 2.48 | Xpsm77-Xipes0225 | 5 | RR, PH, Fe, Zn | 27 |
Meta-QTL4.2 | PgLG04 | 33.81 | 30.06 | 37.55 | 7.49 | IPES0208-Xpsmp2084 | 2 | PH, PL | 61 |
Meta-QTL5.1 | PgLG05 | 1.73 | 0.09 | 3.36 | 3.27 | S5_1669-Xpsmp2261 | 5 | FT, SYPP, PH | 33 |
Meta-QTL5.2 | PgLG05 | 21.31 | 20.1 | 22.52 | 2.42 | IPES0093-Xipes094 | 6 | Fe, SYPP, LSD | 31 |
Meta-QTL5.3 | PgLG05 | 31.44 | 28.99 | 33.89 | 4.9 | S5_2145-Xicmp3085 | 3 | BR, PD, Fe | 57 |
Meta-QTL5.4 | PgLG05 | 111.52 | 109.31 | 113.72 | 4.41 | Xpsmp2064-Xpsms74 | 3 | Zn, SYPP | 4 |
Meta-QTL5.5 | PgLG05 | 125.83 | 122.93 | 128.73 | 5.8 | PSMP2261-IPES0223 | 4 | PH, PD, SYPP | 0 |
Meta-QTL6.1 | PgLG06 | 5.09 | 4.12 | 6.06 | 1.94 | ICMP3002-Xipes0167 | 8 | SYPP, TSW, PL, TGW | 34 |
Meta-QTL6.2 | PgLG06 | 27.76 | 26.59 | 28.93 | 2.34 | BRP53-IPES0176 | 2 | PH, TSW | 2 |
Meta-QTL6.3 | PgLG06 | 56.28 | 53.19 | 59.36 | 6.17 | Xipes035-IPES0085 | 3 | PL, RR | 62 |
Meta-QTL6.4 | PgLG06 | 73.82 | 70.89 | 76.74 | 5.85 | BRP90-BRP65 | 3 | PL, RR | 50 |
Meta-QTL6.5 | PgLG06 | 89.62 | 87.96 | 91.27 | 3.31 | Xipes0176-Xipes0071 | 2 | TSW, GS | 47 |
Meta-QTL7.1 | PgLG07 | 197.64 | 196.23 | 199.05 | 2.82 | Xipes0198-PSMP2263 | 3 | Fe, Zn, TSW | 0 |