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Table 1 List of markers used to study molecular attributes of ARG genotypes

From: Assessment of diversity of Indian aromatic rice germplasm collections for morphological, agronomical, quality traits and molecular characters to identify a core set for crop improvement

S. No.

Chr No.

Primer

Forward sequence

Reverse sequence

1

1

RM577

GCTTTCCCTCTAACCCCTCT

GGATGTACCGCTGACATGAA

2

1

RM8068

GGATGTACCGCTGACATGAA

TGAACATTTATTGATATGGTAAA

3

1

RM10843

CACCTCTTCTGCCTCCTATCATGC

GTTTCTTCGCGAAATCGTGTGG

4

2

RM485

CACACTTTCCAGTCCTCTCC

CATCTTCCTCTCTTCGGCAC

5

2

RM3688

GTTGAATCAAGCTGTGCAGC

AGCTAGGCAAAGCATGCATG

6

2

RM6318

TGCTGCTTCTGTCCAGTGAG

GGATCATAACAAGTGCCTCG

7

2

RM14140

CCTCCCTCTCCAAACACATTGC

TCATCAGCAGACAGAATGTTGACC

8

3

RM85

CCAAAGATGAAACCTGGATTG

GCACAAGGTGAGCAGTCC

9

3

RM251

GAATGGCAATGGCGCTAG

ATGCGGTTCAAGATTCGATC

10

3

RM6759

AAACGGAGTGGTCCATTAGC

GAAAGGTAGATGGGTTTGTGG

11

4

RM252

TTCGCTGACGTGATAGGTTG

ATGACTTGATCCCGAGAACG

12

4

RM273

GAAGCCGTCGTGAAGTTACC

GTTTCCTACCTGATCGCGAC

13

4

RM16701

TTCGCTGACGTGATAGGTTG

ATGACTTGATCCCGAGAACG

14

4

RM16738

AAACGGAGTGGTCCATTAGC

GAAAGGTAGATGGGTTTGTGG

15

4

RM17263

GAGTCGATGTAATGTCATCAGTGC

AGCAACAGCACAACTTGATG

16

4

RM3042

TATCGACGACGGCTGTTGAGAGG

GTTGGTTGGACCTTGGGTCTGG

17

4

RM17115

ATCGGCTTCCATCTGTATTCTCC

CACAGACATCTCGCTACTGACAGC

18

4

HRM17127

CTCAATGTTTCCCACAGTTACCG

TGTGTTATGTGTGCGTGATGAGC

19

4

HRM16592

CTTAGCACGGACACTCATATTTGG

CACAATACGTTTGATGGCTTGC

20

4

HRM16913

GTGTACGTGTTGGCTCTCTGTACG

GATGTTGCTTGTGCTGCAACC

21

5

RM122

GAGTCGATGTAATGTCATCAGTGC

GAAGGAGGTATCGCTTTGTTGGAC

22

5

RM289

TTCCATGGCACACAAGCC

CTGTGCACGAACTTCCAAAG

23

5

RM267

TGCAGACATAGAGAAGGAAGTG

AGCAACAGCACAACTTGATG

24

5

RM459

CTGCAATGCTGCATGACC

CACTTTCTCTGCAGCACCAG

25

6

RM276

CTCAACGTTGACACCTCGTG

TCCTCCATCGAGCAGTATCA

26

6

RM3463

TGCCTCTCTACCGCAACACAGC

CCCTTCCCTTACCTCTCCATTCC

27

6

RM19670

CAAGCAGAAGTGGAGGCAGTCG

GAGAAGGAGGTGGGAGGCATCG

28

6

RM19649

GATTAATGTGTGGGAGCTCATGG

GGATTTCACCCTTCTTGTTGTCG

29

6

RM19642

TCTCCGAGCACTTAAGAAAGTTGG

GAAGCGGTGATAGTGACACAAGG

30

6

RM2523

TTTGTGGGCTAGGATTACCTCACG

CACGAATCCTATGACTGATCCAACG

31

6

HRM20060

CACACATGAGTGGTTAGGTAAGATGC

CAGTGACAAGAGCGAAATGATCC

32

6

HRM20583

GAAGCTACTCCAAGTTCAGTCATTGC

TTAGTACGTATGCACATCCCATCC

33

7

RM11

TCTCCTCTTCCCCCGATC

ATAGCGGGCGAGGCTTAG

34

7

RM229

CACTCACACGAACGACTGAC

CGCAGGTTCTTGTGAAATGT

35

7

RM505

AGAGTTATGAGCCGGGTGTG

GATTTGGCGATCTTAGCAGC

36

7

RM21260

CTGCACAACCAGGAGAAATTAAGC

CTGACCACTCTAGCTTGCCTACC

37

8

RM23595

GCTCTGAGTTGGGATCATCACG

TCTAGGTGACGCTTGTAGGATGG

38

8

RM22837

ACCTGGGTCAGATGTCTGTTTGG

GGTAGAGCTCCATCCATCTTAGTGC

39

8

RM22866

TGCTTGTTCTTCCTCCCAAGC

CTTGCCCGTATTGTGGTCTCG

40

9

RM7424

AGAAGCCCATCTAGCAGCAG

TCAAGCTAGCCACACAGCTG

41

9

RM23899

GGAGGATCGAGGCGAAACTACC

AGCTGTTCGTGACCAGAATCTCC

42

9

RM24383

CACTCACTCACTCAGCTGTTTCTTGG

CTGATCAAGAACCGCAGGAACG

43

10

HRM25262

CAATGCAAAGTCTTGTACGG

GCTACATTGCATAGATCACTCG

44

10

HRM25754

TTTCATTCTACCACCCAGGTTGC

GGACCTCTTCTTTCTCATGTTCTGC

45

10

HRM25796

GAAGCTTCCTCCTACGCTTTCC

TCAAGACTCAAGAGCCACAGTGC

46

10

HRM24954

TGGACAGGTAATCATGTGTCTGC

TTTAGTTGGTGTGCACGTGAGG

47

10

HRM25310

CACGTAATTGCCCGCGTTGC

GATACGGTGATCTGGGAGGAATCG

48

11

RM26329

TAACCGGGACTAAAGATAGAGC

CTACGTCGAAATCGTAACTAGC

49

11

RM26829

GAGAAGGCCTGATGAGTACAAGG

GATTATTGTGCAGGTGAGAAGTGG

50

11

RM27311

TTACCAACCGGGACTAAAGATCG

CAATTCATAACGTCGGTCCTTCC

51

12

RM2851

CTAATATTAGCCATGAAACA

CTTATCAGTAGAACTGCAGA

52

12

RM27406

TGGTAGGTGTGCAATAGAAGTAGG

AATGCATGCAAACACAGTGG

53

12

HRM28616

CACCGGAGTTCCCTCAACTTACC

TACGTATGGCCAATTCAGACTGG

54

12

HRM28110

GATCGATCTTTAGTCCCGGTTGG

AACACAATTCACCGGTCCTTAGC

55

12

HRM27840

TTTGCGTGCTAGGGAGATTAGC

CATTATGTACTTACTCCCTCCCTTCC