Table 3 Genetic diversity in ARG genotypes revealed by 27 SSR markers spread over 12 chromosomes of rice
S. No. | Chromosome (No.) | Primer name | Alleles (No.) | PIC values | Repeat motif |
|---|---|---|---|---|---|
1 | 1 | RM577 | 2 | 0.171 | (TA)9(CA)8 |
2 | 1 | RM10843 | 3 | 0.512 | (TC)10 |
3 | 2 | RM6318 | 3 | 0.662 | (CTT)12 |
4 | 2 | RM14140 | 3 | 0.514 | (TTA)55 |
5 | 3 | RM85 | 4 | 0.688 | (TGG)5(TCT)12 |
6 | 3 | RM6759 | 3 | 0.617 | (TAT)53 |
7 | 4 | HRM16592 | 2 | 0.300 | (ATAC)29 |
8 | 4 | HRM16913 | 4 | 0.711 | (TAT)51 |
9 | 5 | RM289 | 4 | 0.517 | G11(GA)16 |
10 | 5 | RM122 | 3 | 0.533 | (GA)7A(GA)2A(GA)11 |
11 | 5 | RM267 | 2 | 0.500 | (GA)21 |
12 | 6 | RM276 | 5 | 0.721 | (AG)8A3(GA)33 |
13 | 6 | HRM20060 | 3 | 0.585 | (TTA)39 |
14 | 7 | RM11 | 3 | 0.634 | (GA)17 |
15 | 7 | RM229 | 2 | 0.478 | (TC)11(CT)5C3(CT)5 |
16 | 7 | RM505 | 2 | 0.066 | (CT)12 |
17 | 7 | RM21260 | 4 | 0.686 | (AG)18 |
18 | 8 | RM23595 | 3 | 0.652 | (GCAG)6 |
19 | 8 | RM22866 | 3 | 0.367 | (TA)19 |
20 | 9 | RM7424 | 3 | 0.547 | (GGAT)6 |
21 | 9 | RM23899 | 2 | 0.382 | (AT)32 |
22 | 9 | RM24383 | 3 | 0.636 | (CTC)8 |
23 | 10 | HRM25754 | 3 | 0.634 | (AT)47 |
24 | 11 | RM26329 | 3 | 0.614 | (AT)54 |
25 | 11 | RM27311 | 3 | 0.653 | (AT)72 |
26 | 12 | RM27406 | 4 | 0.717 | (AT)72 |
27 | 12 | HRM27840 | 3 | 0.603 | (TAT)37 |