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Table 5 The number of OTUs for which the abundance was significantly different between specific soil treatments and the untreated control for each soil treatment as determined by DESeq2 analysis

From: Effect of fungal, oomycete and nematode interactions on apple root development in replant soil

Treatment

Fungi

Bacteria

Oomycetes

Nematodes

Nem_Fung

434, 13, 141

2291, 103, 116

55, 2, 5

22, 3, 0

Nem_Oom

464, 25, 6

1961, 25, 53

65, 5, 5

22, 4, 0

Nem_ Oom_ Fung

435, 17, 14

2723, 187, 282

55, 10, 6

22, 2, 0

Nem

551, 17, 8

5733, 11, 0

76, 3, 5

22, 2, 0

Total OTUs

2046

5837

174

38

  1. 1The first number is the number of OTUs after DeSeq2 filtering (hence compared between treatments); the second number is the number of OTUs whose relative abundance is significantly (p < 0.05) less in the treated than in the untreated soil; the third number is the number of OTUs whose relative abundance is significantly (p < 0.05) greater in the treated than in the untreated soil