Table 7 PowerCore PIC values for traits and SSR molecular marker characterization
Trait/Marker | Core collection | Entire collection | ||
|---|---|---|---|---|
Shannon Weaver | Allele | Shannon Weaver | Allele | |
Leaf shape of ligule | 0.908 | 3 | 0.800 | 3 |
Stem thickness | 0.213 | 3 | 0.125 | 3 |
Leaf intensity of green colour | 1.125 | 4 | 0.877 | 4 |
Leaf blade pubescence | 1.282 | 5 | 1.028 | 5 |
Panicle exsertion | 1.088 | 3 | 1.093 | 3 |
Stigma colour | 0.631 | 5 | 0.348 | 5 |
Panicle awns | 0.374 | 2 | 0.376 | 2 |
Lemma palea at flowering | 1.072 | 6 | 0.815 | 6 |
Basal leaf sheath colour | 0.539 | 4 | 0.221 | 4 |
Leaf blade colour | 0.612 | 5 | 0.301 | 5 |
Leaf margin colour | 0.432 | 2 | 0.221 | 2 |
Auricle colour | 0.245 | 2 | 0.095 | 2 |
Collar colour | 0.107 | 2 | 0.054 | 2 |
Ligule colour | 0.424 | 3 | 0.226 | 3 |
Plant height | 1.326 | 5 | 1.204 | 5 |
Panicle number | 0.149 | 2 | 0.049 | 2 |
Single plant yield | 1.101 | 4 | 1.010 | 4 |
1000-grain weight | 1.077 | 4 | 0.955 | 4 |
Leaf area | 1.594 | 6 | 1.521 | 6 |
Specific leaf weight | 0.852 | 4 | 0.718 | 4 |
Days to flowering | 0.822 | 3 | 0.704 | 3 |
Panicle length | 1.226 | 5 | 1.120 | 5 |
Hulling | 1.045 | 4 | 0.707 | 4 |
Milling | 0.958 | 4 | 0.771 | 4 |
Head rice recovery | 1.040 | 5 | 0.841 | 5 |
Kernel length | 1.465 | 6 | 1.371 | 6 |
Kernel breadth | 0.850 | 3 | 0.791 | 3 |
Length/breadth ratio | 0.946 | 3 | 0.799 | 3 |
Grain type | 1.056 | 5 | 0.861 | 5 |
Volume expansion ratio | 1.298 | 4 | 1.239 | 4 |
Water uptake | 1.212 | 5 | 1.192 | 5 |
Kernel elongation after cooking | 1.744 | 7 | 1.679 | 7 |
Elongation ratio | 0.850 | 3 | 0.743 | 3 |
Amylose content | 0.718 | 5 | 0.618 | 5 |
Gel consistency | 1.363 | 4 | 1.331 | 4 |
Aroma | 0.674 | 2 | 0.619 | 2 |
Blast | 1.474 | 5 | 1.404 | 5 |
Bacterial leaf blight | 0.466 | 4 | 0.307 | 4 |
Brown planthopper | 0.423 | 5 | 0.250 | 5 |
White backed planthopper | 0.497 | 5 | 0.309 | 5 |
RM10843 | 1.010 | 3 | 1.031 | 3 |
RM85 | 1.173 | 4 | 1.180 | 4 |
RM6759 | 1.545 | 5 | 1.519 | 5 |
RM16592 | 1.037 | 3 | 1.031 | 3 |
RM505 | 0.451 | 2 | 0.391 | 2 |
RM11 | 0.883 | 3 | 0.866 | 3 |
RM021260 | 1.202 | 4 | 1.205 | 4 |
RM289 | 0.706 | 4 | 0.616 | 4 |
RM22866 | 1.080 | 3 | 1.046 | 3 |
RM23595 | 1.082 | 3 | 1.086 | 3 |
RM23899 | 1.500 | 5 | 1.464 | 5 |
RM24383 | 0.749 | 3 | 0.726 | 3 |
RM7424 | 0.572 | 3 | 0.517 | 3 |
RM25754 | 1.462 | 5 | 1.476 | 5 |
RM27311 | 0.728 | 3 | 0.694 | 3 |
RM27406 | 1.750 | 6 | 1.716 | 6 |
RM27840 | 1.368 | 5 | 1.311 | 5 |