Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

Chatterjee, Dipankor; Shohan, Mohammad Umer Sharif; Tamanna, Nishat; Seraj, Zeba I.

doi:10.1186/s43170-023-00173-3

CABI Agriculture and Bioscience

Table 1 Microarray and RNASeq datasets with plant names and salinity stress conditions

From: Meta-analysis of microarray and RNAseq data reveal OsbZIP52 to mediate salt stress responses in sensitive, tolerant and halophyte rice varieties

Tissue	GEO_ACC	Platform	Genome	Stress	Treatment time	Plant	Cultivar	Type	Analysis
Root	GSE76613	Phalanx Rice OneArray® v1	MSU Rice Genome Annotation Project release 6.1, BGI 93-11, GenBank Oryza sativa Japonica Group mRNA	250 mM NaCl	3 h	TNG67	Indica	Tolerant	Microarray
	GSE76613	Phalanx Rice OneArray® v1		250 mM NaCl	3 h	TCN1	Japonica	Sensitive
	GSE58603	Affymetrix Rice Genome Array	Affymetrix rice genome array containing 48,564 japonica and 1260 indica sequences	140 mM NaCl	11 days	PL177	Indica	Tolerant
	GSE58603	Affymetrix Rice Genome Array		140 mM NaCl	11 days	IR64	Indica	Sensitive
Leaf	GSE58603	Affymetrix Rice Genome Array	Affymetrix rice genome array containing 48,564 japonica and 1260 indica sequences	140 mM NaCl	11 days	PL177	Indica	Tolerant	Microarray
	GSE58603	Affymetrix Rice Genome Array		140 mM NaCl	11 days	IR64	Indica	Sensitive
	GSE21651	Affymetrix Rice Genome Array		150 mM NaCl	24 h	CSR11	Indica	Tolerant
	GSE21651	Affymetrix Rice Genome Array		150 mM NaCl	24 h	VSR156	Indica	Sensitive
Root	GSE109341	Illumina HiSeq 2000 (Oryza sativa Japonica Group)	Oryza sativa v. Nipponbare genome	100 mM NaCl, 10 mM Na₂SO₄, 20 mM MgCl₂, and 10 mM CaCl₂	3 days	Baldo	Japonica	Tolerant	RNASeq
Root	GSE109341	Illumina HiSeq 2000 (Oryza sativa Japonica Group)	Oryza sativa v. Nipponbare genome	100 mM NaCl, 10 mM Na₂SO₄, 20 mM MgCl₂, and 10 mM CaCl₂	3 days	Vialone Nano	Japonica	Sensitive	RNASeq
Leaf	GSE109341	Illumina HiSeq 2000 (Oryza sativa Japonica Group)	Oryza sativa v. Nipponbare genome	101 mM NaCl, 10 mM Na₂SO₄, 20 mM MgCl₂, and 10 mM CaCl₂	3 days	Baldo	Japonica	Tolerant	RNASeq
Leaf	GSE109341	Illumina HiSeq 2000 (Oryza sativa Japonica Group)	Oryza sativa v. Nipponbare genome	101 mM NaCl, 10 mM Na₂SO₄, 20 mM MgCl₂, and 10 mM CaCl₂	3 days	Vialone Nano	Japonica	Sensitive	RNASeq

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ISSN: 2662-4044

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